Publications starting 2025
Bioinformatics
Izard J, Xu LH, Yang F, Riethoven JJM (2025) Association of microbiome and postbiotics differs in function of digestive resection. In vitro Cellular and Developmental Biology-Animal (2024), 60 (1), S84-S84
Foster LR, Yang J, Riethoven J-JM, Mukhtar H and Schachtman DP (2025). Inoculation frequency and maize genotype influence plant growth-promoting effects of soil bacteria under low nitrogen conditions. Front. Plant Sci. 16:1637156. doi: 10.3389/fpls.2025.1637156 https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2025.1637156/abstract
Asaf S, Williams YA, Lubna, Riethoven J-JM, Eslamieh J, Al-Rawahi A, Al-Harrasi A, Khan AL. Plastome structure, evolution and diversity of Frankincense-producing Boswellia genus. Funct Integr Genomics 25, 172 (2025). https://doi.org/10.1007/s10142-025-01682-2
CryoEM
Andrey G Baranovskiy, Lucia M Morstadt, Eduardo E Romero, Nigar D Babayeva, Tahir H Tahirov, The human primosome requires replication protein A when copying DNA with inverted repeats, Nucleic Acids Research, Volume 53, Issue 15, 28 August 2025, gkaf799, https://doi.org/10.1093/nar/gkaf799
Microscopy
Wang, R, SC Dass, V Palanisamy, Y Zhou, TS Katz and JM Bosilevac 2025 Characterization of multispecies microbial communities at beef and pork processing plants and their impact on pathogen stress tolerance. Frontiers in Microbiology Jul 2:16:1605719. doi: 10.3389/fmicb.2025.1605719. PMID: 40673151 PMCID: PMC12263626 https://pmc.ncbi.nlm.nih.gov/articles/PMC12263626/
J. Chustecki, A. Schneider, M. Faber, B. Altartouri, and A. Christensen. 2025. (ID-ICPMB05) Running on Empty: Mitochondria Without DNA Exhibit Differential Motility and Connectivity. Physiologia Plantarum 177, no. 4: e70404. https://pubmed.ncbi.nlm.nih.gov/40654058/
Hewitt, CR, N. Wixon, A. Gallegos, Y. Zhou, VC. Huber, MS Killian 2025 Inactivation of Zika virus with beta-cyclodextrin. Vaccines (Basel) 2025 Jan 16;13(1):79. doi: 10.3390/vaccines13010079. PMID: 39852858 https://pubmed.ncbi.nlm.nih.gov/39852858/
Vice, Z, Y. Zhou, SC Dass and R. Wang. 2025 Microscopic Analysis of Temperature Effects on Surface Colonization and Biofilm Morphology of Salmonella enterica. Foods 2025 Jan 15;14(2):268. doi: 10.3390/foods14020268. PMID: 39856935 https://pubmed.ncbi.nlm.nih.gov/39856935/
Proteomics and Metabolomics
Hernandez JB, Hayer SS, Alvarez S, Fischer A, Hassenstab HR, Cooper K, Alsafwani ZW, Benson AK, Suhr Van Haute MJ, Izard J, Song H-S, Clayton JB. Microbiome and metabolome association network analysis identifies Clostridium_sensu_stricto_1 as a stronger keystone genus candidate than Bifidobacterium in the gut of common marmosets. mSystems. 2025 Jul 7 PubMed PMID: 40622159: https://pubmed.ncbi.nlm.nih.gov/40622159/
Fan Q, Jespersen D. Elucidating UV-C-Induced Growth Inhibition in Seashore Paspalum and Bermudagrass from Photosynthesis and Phytohormone Changes. J Plant Growth Regul. 2025. https://link.springer.com/article/10.1007/s00344-025-11629-3
Mallareddy JR, Yang L, Lin WH, Feathers R, Ayers-Ringler J, Tolosa E, Kizhake AG, Kizhake S, Kubica SP, Boghean L, Alvarez S, Naldrett MJ, Singh S, Rana S, Zahid M, Schaefer-Klein J, Roden A, Kosari F, Anastasiadis PZ, Borad M, Natarajan A, Mansfield AS. Fluorescence based live cell imaging identifies exon 14 skipped hepatocyte growth factor receptor (MET) degraders. RSC Adv. 2025 Apr 3. PubMed PMID: 40182503. https://pubmed.ncbi.nlm.nih.gov/40182503/
Kundu P, Shinde S, Grover S, Sattler SE, Louis J. Caffeic acid O-methyltransferase-dependent flavonoid defenses promote sorghum resistance to fall armyworm infestation. Plant Physiol. 2025 Mar 1. PubMed PMID: 39970129. https://pubmed.ncbi.nlm.nih.gov/39970129/
Doran MH, Niu Q, Zeng J, Beneke T, Smith J, Ren P, Fochler S, Coscia A, Höög JL, Meleppattu S, Lishko PV, Wheeler RJ, Gluenz E, Zhang R, Brown A. Evolutionary adaptations of doublet microtubules in trypanosomatid parasites. Science. 2025 Mar 14. Epub 2025 Mar 14. PubMed PMID: 40080577. https://pubmed.ncbi.nlm.nih.gov/40080577/
Abid MSR, Naldrett MJ, Alvarez S, Eichhorn CD, Andrews MT, Checco JW. Rapid Microwave Fixation of the Brain Reveals Seasonal Changes in the Phosphoproteome of Hibernating Thirteen-Lined Ground Squirrels. ACS Chem Neurosci. 2025 Feb 5. Epub 2025 Jan 22. PubMed PMID: 39840768. https://pubmed.ncbi.nlm.nih.gov/39840768/
Fu Y, Tomita T, Weiss LM, West CM, Sibley LD. Toxoplasma chitinase- like protein orchestrates cyst wall glycosylation to facilitate effector export and cyst turnover. Proc Natl Acad Sci U S A. 2025 Feb 4. Epub 2025 Jan 29. PubMed PMID: 39879244. https://pubmed.ncbi.nlm.nih.gov/39879244/
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